Comprehensive Resource Links

Category	Resource Title	Description / Context	Link
FEniCSx	FEniCS Project Website	Official project homepage and documentation portal.	https://fenicsproject.org/
FEniCSx	FEniCSx Tutorial	Comprehensive tutorial by Jørgen S. Dokken.	https://jsdokken.com/dolfinx-tutorial/
FEniCSx	FEniCSx Workshop (Deep Dive)	Workshop materials by Jørgen S. Dokken.	https://jsdokken.com/FEniCS-workshop/src/deep_dive/expressions.html
FEniCSx	FEniCSx Discourse Forum	Official community forum for questions and support.	https://fenicsproject.discourse.group/
FEniCSx	FEniCSx GitHub Repositories	Main GitHub organization for the FEniCS project.	orgs/FEniCS
FEniCSx	DOLFINx Documentation (v0.8.0)	Core documentation for the Python interface.	https://docs.fenicsproject.org/dolfinx/v0.8.0/python/
FEniCSx	BASIX Documentation (v0.8.0)	Documentation for the finite element basis function library.	https://docs.fenicsproject.org/basix/v0.8.0/python/
FEniCSx	UFL Documentation	Unified Form Language documentation.	https://fenics.readthedocs.io/projects/ufl/en/latest/
FEniCSx	FFCx Documentation	FEniCS Form Compiler documentation.	https://docs.fenicsproject.org/ffcx/main/
FEniCSx	Solver Options (PETSc)	Manual for the PETSc library used for linear and nonlinear solvers.	https://petsc.org/main/manual/ksp/
FEniCSx	Changelog	Release notes for DOLFINx on GitHub.	FEniCS/dolfinx
FEniCSx	FEniCS Legacy Documentation	Documentation for older versions of FEniCS.	https://fenicsproject.org/olddocs/
FEniCSx	FEniCS Book	The classic FEniCS book (2011).	https://launchpadlibrarian.net/83776282/fenics-book-2011-10-27-final.pdf
FEniCSx	Mesh Update Discussion	Discourse thread on incrementally deformed mesh schemes/mesh geometry.	https://fenicsproject.discourse.group/t/how-to-do-updated-lagrangian-when-the-displacement-lives-in-a-different-space-to-the-mesh-geometry/10760/2
FEniCSx	Parallel Run Discussion	Discourse thread on discrepancies between serial and parallel runs.	https://fenicsproject.discourse.group/t/different-results-in-serial-and-parallel-run-dolfinx/4370
FEniCSx	Parallel Demo (PML)	Example of a parallel run with Perfectly Matched Layers.	FEniCS/dolfinx
FEniCSx	Parallel Demo (Axisymmetry)	Example of a parallel run for an axisymmetric problem.	FEniCS/dolfinx
GMSH	GMSH Download Page	Official download page for GMSH software.	https://gmsh.info/#Download
GMSH	GMSH Manual	Detailed documentation and reference manual.	https://gmsh.info/doc/texinfo/gmsh.html
GMSH	GMSH Introductory Presentation	General overview course material (PDF).	https://gmsh.info/doc/course/general_overview.pdf
GMSH	GMSH GitLab Repository	Source code and issue tracker.	https://gitlab.onelab.info/gmsh/gmsh
GMSH	GMSH API Tutorials	Tutorials on using the GMSH API.	https://bthierry.pages.math.cnrs.fr/tutorial/gmsh/api/
GMSH	OpenCascade Commands	Reference for OpenCascade commands within GMSH.	https://koehlerson.github.io/gmsh.jl/dev/occ/occ/
Post-processing	ParaView Download Page	Official download page for the visualization tool.	https://www.paraview.org/download/
Docker	Docker Website	Official website for Docker Desktop and Docker Engine.	https://www.docker.com/products/docker-desktop/
Docker	Docker Desktop Installer (Win)	Direct link to the Windows Docker Desktop installer.	Docker Desktop Installer
Docker	Docker Desktop Installer (Mac ARM64)	Direct link for macOS with Apple Silicon.	Docker for Mac (ARM64)
Docker	Docker Desktop Installer (Mac AMD64)	Direct link for macOS with Intel chips.	Docker for Mac (AMD64)
Docker	Docker Installation Resource	Official guide for Windows installation.	https://docs.docker.com/desktop/install/windows-install/
Docker	Docker Hub	Repository for Docker images.	https://hub.docker.com/
Docker	Docker Cheat Sheet (Official)	Official quick reference guide.	https://docs.docker.com/get-started/docker_cheatsheet.pdf
Docker	Docker Cheat Sheet (Collabnix)	Alternative detailed cheat sheet.	https://dockerlabs.collabnix.com/docker/cheatsheet/
Docker	Windows Docker Cheat Sheet	Gist for Windows-specific Docker commands.	https://gist.github.com/danijeljw/a7a2553bd06742648172363ce3983a9a
Containers	Singularity (Apptainer)	Documentation for the HPC-focused container platform.	https://docs.sylabs.io/guides/3.5/user-guide/introduction.html
HPC	Spack Package Manager	Official GitHub repository for the Spack package manager.	spack/spack
HPC Containers	Spack Containers Intro	Quick introduction to using Spack for creating container images (Docker/Singularity).	https://spack.readthedocs.io/en/latest/containers.html#a-quick-introduction
ULHPC Docs	ULHPC-Docs Software Config	Reference to a pull request on the ULHPC documentation for software stack configuration.	ULHPC/ulhpc-docs#files
ULHPC Spack Config	Spack vs. ULHPC Std Env	GitHub Gist comparing Spack configuration against the standard software set on uni.lu clusters.	https://gist.github.com/jhale/23d4d7646e2dc05d0adc0395767d044a
GIT	GIT Documentation	Official documentation for version control.	https://docs.github.com/en/get-started
GIT	GIT Reference	Comprehensive command line reference.	https://git-scm.com/docs
GIT	GIT Interactive Tutorial	Learn Git branching through an interactive web tool.	https://learngitbranching.js.org/?locale=fr_FR
FE Library	Deal.ii Website	Official website for the Deal.ii finite element library.	https://www.dealii.org/
FE Library	Deal.ii Tutorials	Collection of official tutorials.	https://www.dealii.org/current/doxygen/deal.II/Tutorial.html
FE Library	Deal.ii Documentation	Main documentation page.	https://www.dealii.org/current/index.html
FE Library	Deal.ii Library Reference	Doxygen reference for the C++ library.	https://www.dealii.org/current/doxygen/deal.II/index.html
Meshing Tool	Pygmsh	Python library for easy GMSH scripting.	https://pypi.org/project/pygmsh/
Meshing Tool	Pygmsh GitHub	Source code repository.	nschloe/pygmsh
Meshing Tool	Meshio	Tool for reading and writing various mesh formats.	https://pypi.org/project/meshio/
Meshing Tool	Meshio GitHub	Source code repository.	nschloe/meshio
Meshing Tool	Pymesh	Geometry processing library for Python.	https://pymesh.readthedocs.io/en/latest/
Meshing Tool	Pymesh GitHub	Source code repository.	PyMesh/PyMesh
Meshing Tool	Netgen/NGSolve	Finite element code and mesher.	https://ngsolve.org/
Meshing Tool	NGSolve Tutorials	Tutorials by J. Schöberl.	https://jschoeberl.github.io/iFEM/intro.html
Meshing Tool	Neper	Tool for generating polycrystals/complex microstructures.	https://neper.info/
Boolean Lib	CGAL	Computational Geometry Algorithms Library.	CGAL/cgal
Boolean Lib	VTK-based Booleans	Improved boolean operations using VTK.	zippy84/vtkbool
Boolean Lib	MeshLib	Mesh processing library.	MeshInspector/MeshLib
Boolean Lib	mcut	Mesh cutting utility.	cutdigital/mcut
Boolean Lib	trimesh	Python library for loading and using meshes.	mikedh/trimesh
Boolean Lib	vedo (Boolean Example)	Python library for 3D visualization and analysis.	marcomusy/vedo
Boolean Lib	PyMeshLab	Python interface to the MeshLab meshing system.	cnr-isti-vclab/PyMeshLab
Boolean Lib	Pycork (PyPI)	Python bindings for the Cork boolean library.	https://pypi.org/project/pycork/
Boolean Lib	Cork (C Library)	The underlying C library for Pycork.	gilbo/cork
Boolean Lib	Blender	Open-source 3D creation suite (includes Python module).	https://www.blender.org/
Tomography	Tomo2FE GitHub	Workflow for converting tomography data to compliant multipart meshes.	ANR-MultiFIRE/TomoToFE
Tomography	Tomo2FE Article	Associated RILEM technical article.	https://letters.rilem.net/index.php/rilem/article/view/184
Clean Code	Clean Code - Lesson 1	Robert C. Martin’s “Uncle Bob” series on clean code principles.	https://www.youtube.com/watch?v=7EmboKQH8lM
Clean Code	Clean Code - Conference Series	Playlist of related Clean Code conference talks.	https://www.youtube.com/watch?v=7EmboKQH8lM&list=PLmmYSbUCWJ4x1GO839azG_BBw8rkh-zOj&index=1
Documentation	Doxygen	Tool for generating documentation from source code.	https://www.doxygen.nl/index.html